.. include:: ../README.rst .. toctree:: :caption: Installation and Usage :name: getting_started :hidden: :maxdepth: 1 install user_guide cli_package .. toctree:: :caption: Analysis and Interpretation :name: detailed documentation :hidden: :maxdepth: 1 balsamic_filters balsamic_sv_cnv balsamic_annotation balsamic_pon balsamic_methods history bioinfo_softwares resources .. toctree:: :caption: Development guide :name: development_guide :hidden: :maxdepth: 1 README programming_guide semver FAQs