.. include:: ../README.rst

.. toctree::
   :caption: Getting started
   :name: getting_started
   :hidden:
   :maxdepth: 1

   install
   user_guide
   cli_package


.. toctree::
   :caption: Detailed documentation
   :name: detailed documentation
   :hidden:
   :maxdepth: 1

   balsamic_filters
   balsamic_sv_cnv
   balsamic_annotation
   balsamic_methods
   history
   bioinfo_softwares
   resources


.. toctree::
    :caption: Development guide
    :name: development_guide
    :hidden:
    :maxdepth: 1

    git_etiquette 
    snakemake_etiquette
    README
    semver
    FAQs