.. include:: ../README.rst .. toctree:: :caption: Getting started :name: getting_started :hidden: :maxdepth: 1 install user_guide .. toctree:: :caption: Resources :name: resources :hidden: :maxdepth: 1 bioinfo_softwares .. toctree:: :caption: CLI reference :name: api_cli_reference :hidden: :maxdepth: 1 cli_package .. toctree:: :caption: Other Info :name: other_info :hidden: :maxdepth: 1 history resources .. toctree:: :caption: Development guide :name: development_guide :hidden: :maxdepth: 1 git_etiquette snakemake_etiquette README semver FAQs