BALSAMIC.commands.run package¶
Submodules¶
BALSAMIC.commands.run.analysis module¶
BALSAMIC.commands.run.base module¶
BALSAMIC.commands.run.reference module¶
BALSAMIC.commands.run.scheduler module¶
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class
BALSAMIC.commands.run.scheduler.
QsubScheduler
[source]¶ Bases:
object
docstring for QsubScheduler
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class
BALSAMIC.commands.run.scheduler.
SbatchScheduler
[source]¶ Bases:
object
Builds sbatch command. Commands map to SLURM sbatch options. Params: —— account - -A/–account dependency - {{dependencies}} error - -e/–error mail_type - –mail-type mail_user - –mail-user ntasks - -n/–ntasks output - -o/–output qos - -q/–qos time - -t/–time
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BALSAMIC.commands.run.scheduler.
read_sample_config
(input_json)[source]¶ load input sample_config file. Output of balsamic config sample.